New Analysis

Upload your compound-target-gene CSV file and configure your analysis parameters.

1 Upload Input File

Drag & drop your CSV file here

or click to browse

Accepted: CSV, TXT (max 50 MB) Format guide

2 Analysis Details

Title

Analysis Mode

Description (optional)

Minimum Genes

Minimum gene count for enrichment (1-100)

P-value Cutoff

Significance threshold for enrichment

Enrichment Method

FDR Correction

Enrichment Databases

KEGG

GO Biological Process

GO Molecular Function

Reactome

Config File (YAML/JSON, optional)

Analysis Modes

Network Pharmacology

Full analysis: plants + compounds + genes

Gene Analysis Only

Gene-level enrichment and network

Compound-Target

Compound-gene interaction analysis

Full Hierarchical

Complete plant → compound → gene hierarchy

Input Format

CSV with the following columns:

compounds_list,plants_list,genes
Quercetin,Ginkgo,TP53
Kaempferol,Ginkgo,AKT1
Baicalein,Scutellaria,MAPK1

Only the genes column is required.

Cite NEXUS

Ping et al. Int. J. Mol. Sci. 2025, 26, 11147.

compounds_list,plants_list,genes
Compound1,Plant1,GENE1
Compound2,Plant2,GENE2

Gene,log2FoldChange,padj
GENE1,2.5,0.001
GENE2,-1.8,0.01

genes
GENE1
GENE2
GENE3

3 Advanced Configuration (optional)